Basic Information
Locus ID:
AH07.361
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 3648960 | 3651281 | + | AH07.361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 46,536.78 Da | 46.87 | 91.71 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 42 | 239 | 2.35419E-135 | - |
| CDD | cd18787 | SF2_C_DEAD | 250 | 380 | 4.30705E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 263 | 371 | 8.8E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 62 | 223 | 2.8E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 106 | 391 | 2.29E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 246 | 410 | 2.0E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 27 | 245 | 2.1E-67 | IPR027417 |
| SMART | SM00490 | helicmild6 | 290 | 371 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 56 | 253 | 3.8E-58 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 238 | 29.478168 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 410 | 26.01976 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 37 | 65 | 10.568982 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 184 | 192 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 1.57E-278 |
| RefSeq | XP_004951905.1 | eukaryotic initiation factor 4A [Setaria italica] | 6.65E-299 |
| Q41741 | Eukaryotic initiation factor 4A OS=Zea mays OX=4577 PE=2 SV=1 | 6.87E-294 | |
| TrEMBL | K3YSX2 | Eukaryotic initiation factor 4A-11 OS=Setaria italica OX=4555 GN=101779371 PE=3 SV=1 | 1.5E-297 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology