halophFGD

Basic Information

Locus ID: AH07.3519

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH07	53013482	53015330	-	AH07.3519

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.83	45,456.72 Da	52.34	77.61	-0.78

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Gene3D	G3DSA:3.30.420.10	-	231	367	4.1E-14	IPR036397
MobiDBLite	mobidb-lite	consensus disorder prediction	1	62	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	24	38	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021303308.1	uncharacterized protein LOC8068171 [Sorghum bicolor]	8.86E-108
TrEMBL	A0A0A9LSH0	HTH_Tnp_Tc3_2 domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1	1.2E-109

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	6	Ah006213, Ah010759, Ah019887, Ah031043, Ah032641, Ah033162
Amaranthaceae	Beta vulgaris	2	BVRB_1g014360, BVRB_7g166780
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg19944, Sbi_jg25545, Sbi_jg44952, Sbi_jg48193 ... Sbi_jg51365, Sbi_jg53934, Sbi_jg7308
Amaranthaceae	Salicornia europaea	2	Seu_jg10539, Seu_jg27544
Amaranthaceae	Suaeda aralocaspica	8	GOSA_00003954, GOSA_00008894, GOSA_00013904, GOSA_00018345 ... GOSA_00019430, GOSA_00023386, GOSA_00024645, GOSA_00027346
Amaranthaceae	Suaeda glauca	21	Sgl00164, Sgl02767, Sgl05214, Sgl17655, Sgl22329, Sgl23295 ... Sgl23450, Sgl24101, Sgl33028, Sgl40822, Sgl53976, Sgl55471, Sgl59310, Sgl59446, Sgl60984, Sgl62170, Sgl66731, Sgl75196, Sgl77769, Sgl78959, Sgl82722
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000002058, gene:ENSEOMG00000009252 ... gene:ENSEOMG00000020227, gene:ENSEOMG00000044078, gene:ENSEOMG00000049804
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4BG0017180, CQ.Regalona.r1.7BG0014940
Anacardiaceae	Pistacia vera	4	pistato.v30065960, pistato.v30184240, pistato.v30184650 ... pistato.v30196580
Apiaceae	Apium graveolens	1	Ag7G00029
Brassicaceae	Brassica nigra	2	BniB02g000050.2N, BniB05g035450.2N
Plantaginaceae	Plantago ovata	54	Pov_00004003, Pov_00004711, Pov_00004712, Pov_00004713 ... Pov_00006290, Pov_00007084, Pov_00007713, Pov_00008217, Pov_00008218, Pov_00008219, Pov_00008705, Pov_00008708, Pov_00008709, Pov_00009252, Pov_00009462, Pov_00009682, Pov_00010261, Pov_00010262, Pov_00010284, Pov_00011082, Pov_00011616, Pov_00011952, Pov_00014351, Pov_00015822, Pov_00016625, Pov_00017130, Pov_00017151, Pov_00017371, Pov_00017500, Pov_00017501, Pov_00018291, Pov_00018292, Pov_00018873, Pov_00019076, Pov_00019111, Pov_00019572, Pov_00019604, Pov_00019605, Pov_00024169, Pov_00026405, Pov_00028150, Pov_00028151, Pov_00028152, Pov_00029306, Pov_00029864, Pov_00029973, Pov_00031416, Pov_00031874, Pov_00034659, Pov_00035014, Pov_00035443, Pov_00036356, Pov_00036627, Pov_00038666
Plumbaginaceae	Limonium bicolor	5	Lb0G37883, Lb1G07087, Lb3G18280, Lb3G19762, Lb5G26493
Poaceae	Echinochloa crus-galli	43	AH01.2638, AH01.3064, AH02.2640, AH02.2885, AH02.4139 ... AH03.1568, AH03.2233, AH03.2355, AH03.2588, AH04.480, AH05.2750, AH05.3408, AH05.629, AH07.1523, AH07.3118, AH07.3519, AH07.3522, BH01.1215, BH01.3692, BH01.4943, BH02.1894, BH02.786, BH04.1370, BH04.2108, BH04.469, BH05.4183, BH06.1700, BH07.1372, BH07.1476, BH08.1240, BH08.197, BH08.2513, BH09.1437, CH02.2412, CH02.3580, CH02.773, CH03.1951, CH03.268, CH04.1222, CH05.3065, CH05.3152, CH05.906, CH07.2545
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_5AG0397530, gene-QOZ80_6BG0487580
Poaceae	Hordeum vulgare	32	HORVU.MOREX.r3.1HG0023760.1, HORVU.MOREX.r3.2HG0150520.1 ... HORVU.MOREX.r3.1HG0034760.1.CDS1, HORVU.MOREX.r3.1HG0048180.1.CDS1, HORVU.MOREX.r3.1HG0068760.1.CDS1, HORVU.MOREX.r3.2HG0106270.1.CDS1, HORVU.MOREX.r3.2HG0136880.1.CDS1, HORVU.MOREX.r3.2HG0154210.1, HORVU.MOREX.r3.2HG0162800.1.CDS1, HORVU.MOREX.r3.2HG0175150.1.CDS1, HORVU.MOREX.r3.2HG0209420.1, HORVU.MOREX.r3.3HG0256350.1.CDS1, HORVU.MOREX.r3.3HG0259980.1, HORVU.MOREX.r3.3HG0314930.1.CDS1, HORVU.MOREX.r3.4HG0337910.1, HORVU.MOREX.r3.4HG0347350.1.CDS1, HORVU.MOREX.r3.4HG0356950.1.CDS1, HORVU.MOREX.r3.4HG0392290.1, HORVU.MOREX.r3.4HG0396050.1, HORVU.MOREX.r3.4HG0397470.1.CDS1, HORVU.MOREX.r3.5HG0447660.1.CDS1, HORVU.MOREX.r3.5HG0511200.1, HORVU.MOREX.r3.6HG0566260.1.CDS1, HORVU.MOREX.r3.6HG0578500.1.CDS1, HORVU.MOREX.r3.6HG0599650.1, HORVU.MOREX.r3.6HG0617440.1, HORVU.MOREX.r3.7HG0672440.1, HORVU.MOREX.r3.7HG0672910.1.CDS1, HORVU.MOREX.r3.7HG0696580.1.CDS1, HORVU.MOREX.r3.7HG0715880.1, HORVU.MOREX.r3.7HG0723070.1, HORVU.MOREX.r3.7HG0735980.1
Poaceae	Lolium multiflorum	10	gene-QYE76_003764, gene-QYE76_009617, gene-QYE76_024556 ... gene-QYE76_031867, gene-QYE76_034788, gene-QYE76_042154, gene-QYE76_052949, gene-QYE76_068735, gene-QYE76_069014, gene-QYE76_069278
Poaceae	Oryza coarctata	1	Oco24G004250
Poaceae	Paspalum vaginatum	15	gene-BS78_02G030300, gene-BS78_02G055200, gene-BS78_K075900 ... gene-BS78_03G128000, gene-BS78_03G188400, gene-BS78_03G254400, gene-BS78_03G406100, gene-BS78_04G062700, gene-BS78_04G126800, gene-BS78_06G019800, gene-BS78_06G093700, gene-BS78_09G002700, gene-BS78_09G084000, gene-BS78_09G228800, gene-BS78_10G142600
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0106934, Pt_Chr0200848, Pt_Chr0201080, Pt_Chr0302395 ... Pt_Chr0403953, Pt_Chr0501066, Pt_Chr0501820, Pt_Chr0501882, Pt_Chr0505613
Poaceae	Sporobolus alterniflorus	29	Chr01G001760, Chr01G022260, Chr01G023010, Chr02G016090 ... Chr02G021560, Chr02G024940, Chr02G024960, Chr06G025420, Chr06G025890, Chr07G014790, Chr07G023100, Chr09G015980, Chr09G020310, Chr09G020710, Chr10G002450, Chr10G002460, Chr10G010590, Chr11G001520, Chr11G013920, Chr13G019020, Chr13G019030, Chr17G005800, Chr21G013170, Chr22G017190, Chr25G004890, Chr26G008470, Chr27G003110, Chr28G005960, Chr29G004450
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG023820, gene_TRIDC1AG044510 ... gene_TRIDC1BG027560, gene_TRIDC2AG018450, gene_TRIDC5AG052350, gene_TRIDC6AG054590, gene_TRIDC7BG072050
Poaceae	Zoysia japonica	2	nbis-gene-41619, nbis-gene-46116
Poaceae	Zoysia macrostachya	3	Zma_g14123, Zma_g18700, Zma_g23636
Solanaceae	Lycium barbarum	4	gene-LOC132636239, gene-LOC132639179, gene-LOC132639362 ... gene-LOC132642464