Basic Information
Locus ID:
AH07.3398
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 51783283 | 51784647 | - | AH07.3398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 48,462.70 Da | 52.16 | 98.37 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 48 | 89 | 5.35142E-22 | - |
| Pfam | PF04564 | U-box domain | 44 | 115 | 3.0E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 217 | 443 | 4.87E-20 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 119 | 1.46E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 120 | 1.4E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 123 | 447 | 2.2E-19 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 47 | 110 | 3.1E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 43 | 117 | 33.40313 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 2.45E-78 |
| RefSeq | XP_039791383.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 1.91E-249 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 2.37E-77 | |
| TrEMBL | A0A8T0X7N0 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_1NG411100 PE=4 SV=1 | 4.32E-248 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology