Basic Information
Locus ID:
AH07.331
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 3344971 | 3353491 | - | AH07.331 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 136,628.58 Da | 49.37 | 72.49 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 654 | 786 | 3.41239E-73 | - |
| CDD | cd17920 | DEXHc_RecQ | 451 | 653 | 3.19443E-100 | - |
| Pfam | PF09382 | RQC domain | 867 | 984 | 5.8E-22 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 788 | 860 | 3.6E-16 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 674 | 776 | 3.1E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 465 | 633 | 8.2E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1016 | 1083 | 1.2E-14 | IPR002121 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1011 | 1091 | 1.5E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 652 | 911 | 2.45E-59 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 868 | 1005 | 7.07E-16 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 438 | 795 | 2.78E-41 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1007 | 1094 | 3.9E-23 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 654 | 863 | 1.1E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 426 | 653 | 4.8E-93 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 867 | 979 | 8.0E-21 | IPR036388 |
| SMART | SM00487 | ultradead3 | 459 | 662 | 2.3E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 696 | 777 | 6.8E-28 | IPR001650 |
| SMART | SM00341 | hrdc7 | 1011 | 1093 | 4.2E-7 | IPR002121 |
| SMART | SM00956 | RQC_2 | 869 | 981 | 4.0E-23 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 455 | 920 | 1.1E-167 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 686 | 727 | 8.900925 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 671 | 822 | 21.169827 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 471 | 646 | 22.562029 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1011 | 1093 | 19.686342 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 585 | 594 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1155 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_025798867.1 | ATP-dependent DNA helicase Q-like 4A [Panicum hallii] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7F1P4 | DNA helicase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G030900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology