Basic Information
Locus ID:
AH07.3300
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 50964431 | 50965516 | - | AH07.3300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 41,260.10 Da | 49.08 | 88.95 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 92 | 118 | 3.5E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 163 | 185 | 0.82 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 266 | 351 | 1.5E-30 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 126 | 152 | 0.39 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 233 | 8.2E-28 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 92 | 118 | 3.1E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 89 | 119 | 9.624079 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 3.77E-135 |
| RefSeq | XP_039840653.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Panicum virgatum] | 5.19E-254 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 3.64E-134 | |
| TrEMBL | A0A2T7E9J6 | DYW_deaminase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G148100 PE=4 SV=1 | 3.86E-254 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology