halophFGD

Basic Information

Locus ID: AH07.3263

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Belongs to the ubiquitin-conjugating enzyme family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH07	50692086	50692843	-	AH07.3263

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.83	22,402.42 Da	50.79	79.13	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00179	Ubiquitin-conjugating enzyme	11	81	6.9E-15	IPR000608
SUPERFAMILY	SSF54495	UBC-like	7	139	4.49E-24	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	8	138	1.5E-21	IPR016135
SMART	SM00212	ubc_7	10	140	5.3E-12	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	7	192	17.034462	IPR000608
Coils	Coil	Coil	175	195	-	-

KEGG Pathway

KO Term:

K06689 (ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_025822763.1	ubiquitin-conjugating enzyme E2 11-like [Panicum hallii]	4.66E-60
Swiss-Prot	P35129	Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans OX=6239 GN=let-70 PE=1 SV=1	1.77E-20
TrEMBL	A0A1E5USU2	Ubiquitin-conjugating enzyme E2 11 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0023047 PE=4 SV=1	2.62E-75

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	4	AH07.3263, BH07.3085, BH07.3086, CH07.3155