halophFGD

Basic Information

Locus ID: AH07.316

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Cullin family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH07	3232118	3232826	-	AH07.316

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.23	23,496.75 Da	54.23	81.07	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00888	Cullin family	30	190	7.1E-24	IPR001373
SUPERFAMILY	SSF74788	Cullin repeat-like	23	188	2.62E-25	IPR016159
Gene3D	G3DSA:1.20.1310.10	Cullin Repeats	14	147	1.4E-25	-

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process)

Molecular Function:

GO:0031625 (ubiquitin protein ligase binding)

KEGG Pathway

KO Term:

K03869 (cullin 3)

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039774606.1	cullin-3B-like isoform X2 [Panicum virgatum]	8.55E-78
Swiss-Prot	Q6DE95	Cullin-3-A OS=Xenopus laevis OX=8355 GN=cul3a PE=1 SV=1	9.78E-15
TrEMBL	A0A8T0XK62	Cullin domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG058900 PE=3 SV=1	2.69E-76

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	7	AH07.316, AH07.318, AH07.319, BH07.413, CH03.4503, CH03.4504 ... CH03.4505
Poaceae	Lolium multiflorum	2	gene-QYE76_046640, gene-QYE76_046668
Poaceae	Oryza sativa	1	LOC_Os04g55000.1