Basic Information
Locus ID:
AH07.3126
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 49426070 | 49438334 | - | AH07.3126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.97 | 113,314.57 Da | 69.34 | 65.66 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 729 | 1012 | 5.52962E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 977 | 1012 | 0.0047 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 756 | 814 | 1.7E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 889 | 927 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 839 | 873 | 4.0E-6 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 714 | 1014 | 5.02E-59 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 665 | 1015 | 6.1E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 930 | 970 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 792 | 830 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 750 | 789 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 834 | 873 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 973 | 1012 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 885 | 927 | 2.0E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 980 | 1013 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 841 | 875 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 980 | 1013 | 10.15287 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 841 | 882 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 757 | 798 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 757 | 794 | 8.940149 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 999 | 1013 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 860 | 874 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 439 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 3.56E-222 |
| RefSeq | XP_025808881.1 | cell division cycle 20.2, cofactor of APC complex-like [Panicum hallii] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 3.42E-221 | |
| TrEMBL | A0A835F734 | ANAPC4_WD40 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_017721 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology