Basic Information
Locus ID:
AH07.3087
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 49113537 | 49115285 | - | AH07.3087 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 42,845.06 Da | 39.98 | 66.40 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 67 | 8.9E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 78 | 3.12E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 73 | 2.8E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 4 | 73 | 6.1E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 77 | 11.195903 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 394 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 2.49E-79 |
| RefSeq | XP_004953570.1 | binding partner of ACD11 1 [Setaria italica] | 3.84E-177 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 1.75E-56 | |
| TrEMBL | K3Z117 | RRM domain-containing protein OS=Setaria italica OX=4555 GN=101772192 PE=4 SV=1 | 8.68E-176 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology