Basic Information
Locus ID:
AH07.3006
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
BRH1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 48262455 | 48263255 | - | AH07.3006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 28,886.85 Da | 63.09 | 86.73 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 163 | 207 | 8.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 213 | 2.83E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 212 | 9.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 164 | 206 | 8.0E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 163 | 207 | 0.0032 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 207 | 12.312242 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 7.29E-33 |
| RefSeq | XP_039854418.1 | brassinosteroid-responsive RING protein 1-like [Panicum virgatum] | 2.34E-126 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 7.05E-32 | |
| TrEMBL | A0A3L6RX51 | Putative E3 ubiquitin-protein ligase RHA2B OS=Panicum miliaceum OX=4540 GN=C2845_PM11G30120 PE=4 SV=1 | 1.29E-134 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology