Basic Information
Locus ID:
AH07.2932
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 47581645 | 47582112 | + | AH07.2932 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 16,405.57 Da | 65.60 | 83.16 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 91 | 133 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 139 | 2.12E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 137 | 9.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 91 | 132 | 2.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 91 | 133 | 11.176261 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 61 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11680.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 3.95E-8 |
| RefSeq | XP_025798956.1 | probable E3 ubiquitin-protein ligase ATL44 [Panicum hallii] | 9.62E-85 |
| Q6ZSG1 | E3 ubiquitin-protein ligase ARK2C OS=Homo sapiens OX=9606 GN=ARK2C PE=1 SV=1 | 2.71E-9 | |
| TrEMBL | A0A2T7FA66 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G333200 PE=4 SV=1 | 1.9E-83 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0002570 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2932, BH07.2754, CH07.2827 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0140240 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602480.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008089, gene-QYE76_024237 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G224000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G005520, Chr09G023940, Chr15G007140, Chr15G019500 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G460500, Tel6E01G470100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG037730, gene_TRIDC6AG038730 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS6A02G244500.1.cds1, TraesCS6A02G251500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb250010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9223 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14084 |