Basic Information
Locus ID:
AH07.2922
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 47505591 | 47511973 | + | AH07.2922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 117,726.16 Da | 51.04 | 80.97 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 970 | 1010 | 1.76737E-22 | - |
| CDD | cd01989 | STK_N | 49 | 205 | 4.33427E-37 | - |
| Pfam | PF04564 | U-box domain | 967 | 1034 | 2.4E-14 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 686 | 885 | 4.4E-25 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 62 | 169 | 6.59E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 959 | 1034 | 3.71E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 655 | 937 | 2.13E-44 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 753 | 959 | 2.6E-30 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 657 | 751 | 5.0E-23 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 44 | 215 | 7.6E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 966 | 1038 | 4.2E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 969 | 1031 | 2.9E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 965 | 1038 | 30.280598 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 680 | 950 | 21.022217 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| Coils | Coil | Coil | 398 | 418 | - | - |
| Coils | Coil | Coil | 611 | 652 | - | - |
| Coils | Coil | Coil | 575 | 602 | - | - |
| Coils | Coil | Coil | 483 | 531 | - | - |
| Coils | Coil | Coil | 547 | 567 | - | - |
| Coils | Coil | Coil | 346 | 366 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 3.86E-120 |
| RefSeq | XP_014660103.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 5.86E-132 | |
| TrEMBL | A0A4V6DD86 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_1G269300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2922, BH07.2744, CH07.2816 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0140170, gene-QOZ80_2BG0195840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602150.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G017570, Oco04G018320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G223200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205955 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G024000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG037900 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G245400.1, TraesCS6D02G227800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb186880_P001 |