Basic Information
Locus ID:
AH07.2917
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 47464357 | 47468712 | + | AH07.2917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 92,463.04 Da | 47.17 | 80.58 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 57 | 211 | 3.75529E-40 | - |
| CDD | cd14066 | STKc_IRAK | 464 | 732 | 1.11428E-86 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 756 | 797 | 9.15593E-24 | - |
| Pfam | PF00069 | Protein kinase domain | 461 | 673 | 3.9E-42 | IPR000719 |
| Pfam | PF04564 | U-box domain | 753 | 820 | 4.9E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 750 | 820 | 4.59E-22 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 56 | 175 | 3.6E-8 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 433 | 722 | 6.2E-69 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 444 | 530 | 2.4E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 531 | 744 | 8.8E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 751 | 825 | 1.1E-27 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 50 | 203 | 1.6E-8 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 755 | 818 | 9.7E-30 | IPR003613 |
| SMART | SM00220 | serkin_6 | 458 | 729 | 8.2E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 458 | 733 | 35.848785 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 751 | 825 | 33.102375 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 576 | 588 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 464 | 485 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 245 | - | - |
| Coils | Coil | Coil | 286 | 306 | - | - |
| Coils | Coil | Coil | 338 | 372 | - | - |
| Coils | Coil | Coil | 394 | 428 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 6.42E-214 |
| RefSeq | XP_039853488.1 | U-box domain-containing protein 33-like [Panicum virgatum] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 6.18E-213 | |
| TrEMBL | A0A3L6QJ28 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM12G22320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology