Basic Information
Locus ID:
AH07.2778
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 45944117 | 45955014 | + | AH07.2778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 100,316.83 Da | 48.31 | 76.35 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 670 | 799 | 6.51948E-56 | - |
| CDD | cd17940 | DEADc_DDX6 | 460 | 660 | 4.76394E-141 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 483 | 647 | 1.6E-44 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 684 | 790 | 1.6E-27 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 527 | 808 | 1.9E-68 | IPR027417 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 342 | 410 | 4.45E-7 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 663 | 813 | 6.0E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 442 | 662 | 1.3E-66 | IPR027417 |
| SMART | SM00490 | helicmild6 | 709 | 790 | 1.3E-30 | IPR001650 |
| SMART | SM00487 | ultradead3 | 477 | 673 | 3.1E-56 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 669 | 832 | 21.722538 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 489 | 659 | 30.370979 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 458 | 486 | 10.097242 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 605 | 613 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 437 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00660.1 | RNAhelicase-like 8. | 3.71E-258 |
| RefSeq | XP_004953257.1 | DEAD-box ATP-dependent RNA helicase 8 [Setaria italica] | 1.52E-299 |
| Q6H7S2 | DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0641800 PE=2 SV=2 | 9.18E-291 | |
| TrEMBL | A0A811PYX3 | DEAD-box ATP-dependent RNA helicase 8 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS33905 PE=3 SV=1 | 1.21E-299 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||