Basic Information
Locus ID:
AH07.2766
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 45782135 | 45782932 | - | AH07.2766 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 28,339.87 Da | 68.33 | 69.47 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 45 | 97 | 4.47303E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 47 | 95 | 4.5E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 108 | 3.14E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 154 | 7.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 47 | 95 | 1.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 47 | 96 | 12.607302 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 62 | 71 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 174 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 6.27E-27 |
| RefSeq | XP_039851870.1 | E3 ubiquitin-protein ligase RMA3-like [Panicum virgatum] | 1.24E-127 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 3.63E-27 | |
| TrEMBL | A0A8T0XSQ1 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_1KG408700 PE=4 SV=1 | 2.8E-126 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology