Basic Information
Locus ID:
AH07.2762
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 45739393 | 45756626 | + | AH07.2762 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 200,226.23 Da | 58.09 | 72.60 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 380 | 706 | 1.73988E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 535 | 571 | 0.0011 | IPR001680 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 1128 | 1237 | 1.9E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 1573 | 1629 | 1.0E-5 | IPR014720 |
| Pfam | PF00400 | WD domain, G-beta repeat | 493 | 528 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 383 | 415 | 6.9E-7 | IPR001680 |
| SUPERFAMILY | SSF56784 | HAD-like | 1005 | 1263 | 5.77E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 1569 | 1630 | 5.29E-10 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 1693 | 1764 | 1.55E-9 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 378 | 709 | 6.87E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 471 | 755 | 3.6E-44 | IPR015943 |
| Gene3D | G3DSA:3.30.160.20 | - | 1570 | 1645 | 1.7E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 370 | 466 | 8.9E-11 | IPR015943 |
| Gene3D | G3DSA:3.40.50.1000 | - | 1005 | 1266 | 2.9E-24 | IPR023214 |
| SMART | SM00320 | WD40_4 | 532 | 571 | 1.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 574 | 612 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 665 | 706 | 0.24 | IPR001680 |
| SMART | SM00358 | DRBM_3 | 1566 | 1630 | 6.5E-5 | IPR014720 |
| SMART | SM00320 | WD40_4 | 377 | 416 | 4.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 529 | 6.6E-9 | IPR001680 |
| SMART | SM00358 | DRBM_3 | 1692 | 1759 | 0.015 | IPR014720 |
| SMART | SM00320 | WD40_4 | 628 | 664 | 35.0 | IPR001680 |
| SMART | SM00577 | forpap2 | 1096 | 1246 | 1.2E-10 | IPR004274 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 538 | 572 | 9.862871 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 384 | 417 | 12.130133 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 498 | 538 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 1691 | 1760 | 8.833737 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 1594 | 1631 | 11.164263 | IPR014720 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 384 | 417 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 1011 | 1262 | 16.225962 | IPR004274 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 538 | 572 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 498 | 532 | 10.811958 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 403 | 417 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 212 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 6.34E-287 |
| RefSeq | XP_004953235.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Setaria italica] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 6.09E-286 | |
| TrEMBL | A0A368PPD9 | protein-serine/threonine phosphatase OS=Setaria italica OX=4555 GN=SETIT_1G248600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology