Basic Information
Locus ID:
AH07.2581
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 43084945 | 43091489 | - | AH07.2581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 88,420.51 Da | 46.75 | 60.15 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 579 | 623 | 0.00406425 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 576 | 617 | 2.56E-8 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 20 | 245 | 3.11E-10 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 27 | 282 | 5.9E-6 | IPR011989 |
| Gene3D | G3DSA:2.30.30.140 | - | 572 | 623 | 4.1E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 735 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 821 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 576 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 1.03E-67 | |
| RefSeq | XP_025804875.1 | ABC transporter F family member 4-like isoform X1 [Panicum hallii] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 3.83E-64 | |
| TrEMBL | A0A3L6QHV2 | Tudor domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM12G20300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology