Basic Information
Locus ID:
AH07.2578
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 43054787 | 43055641 | + | AH07.2578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.24 | 31,097.21 Da | 60.89 | 64.26 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 159 | 201 | 2.46281E-10 | - |
| Pfam | PF13639 | Ring finger domain | 158 | 201 | 2.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 211 | 8.08E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 214 | 3.7E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 200 | 9.8E-6 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 155 | 209 | 0.0017 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 201 | 12.326995 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 273 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_008678791.3 | E3 ubiquitin-protein ligase MPSR1 [Zea mays] | 3.23E-88 |
| TrEMBL | A0A1E5VPT6 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011821 PE=4 SV=1 | 7.02E-107 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.2577, AH07.2578, BH07.2388, CH07.2462 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0137240, gene-QOZ80_2BG0192840 |
| Poaceae | Oryza coarctata | 1 | Oco03G015160 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G008410, Chr13G007740, Chr15G009920 |
| Poaceae | Zea mays | 2 | Zm00001eb246920_P001, Zm00001eb246930_P001 |