Basic Information
Locus ID:
AH07.2400
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 41245589 | 41250958 | + | AH07.2400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 95,688.86 Da | 40.62 | 84.13 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 41 | 338 | 0.0 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 355 | 656 | 7.80905E-166 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 360 | 652 | 4.7E-44 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 354 | 656 | 7.33E-51 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 40 | 337 | 1.07E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 353 | 657 | 3.2E-52 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 40 | 338 | 1.3E-32 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 355 | 657 | 40.094681 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 41 | 339 | 29.595392 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 814 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 3.78E-253 |
| RefSeq | XP_025808695.1 | glycerophosphodiester phosphodiesterase GDPDL4-like [Panicum hallii] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 3.64E-252 | |
| TrEMBL | A0A2T7F8B9 | glycerophosphodiester phosphodiesterase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G280900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology