Basic Information
Locus ID:
AH07.2371
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 40890529 | 40898366 | - | AH07.2371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 120,172.85 Da | 47.82 | 93.05 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 233 | 476 | 3.9E-36 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 27 | 106 | 4.8E-7 | IPR041118 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 227 | 489 | 1.57E-51 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 470 | 790 | 1.26E-13 | - |
| Gene3D | G3DSA:1.10.8.430 | - | 386 | 478 | 2.0E-9 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 212 | 377 | 2.2E-29 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 26 | 133 | 3.2E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 545 | 842 | 2.7E-12 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 253 | 268 | 2.3E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 422 | 436 | 2.3E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 562 | 578 | 2.3E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 325 | 339 | 2.3E-13 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46730.1 | NB-ARC domain-containing disease resistance protein. | 3.08E-39 |
| RefSeq | XP_048532444.1 | disease resistance protein RGA5-like isoform X2 [Triticum urartu] | 6.93E-233 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 5.89E-98 | |
| TrEMBL | A0A811QC62 | NB-ARC domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS40372 PE=4 SV=1 | 8.61E-259 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology