Basic Information
Locus ID:
AH07.2325
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 40336436 | 40340850 | + | AH07.2325 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 50,193.65 Da | 52.46 | 83.89 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00025 | ADP-ribosylation factor family | 12 | 185 | 1.3E-41 | IPR006689 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 17 | 187 | 6.0E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 14 | 219 | 8.1E-50 | IPR027417 |
| SMART | SM00175 | rab_sub_5 | 18 | 189 | 0.0031 | - |
| SMART | SM00177 | arf_sub_2 | 1 | 190 | 4.7E-33 | - |
| SMART | SM00178 | sar_sub_1 | 2 | 186 | 3.4E-6 | IPR006689 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 54 | 145 | 1.3E-11 | IPR005225 |
| ProSiteProfiles | PS51417 | small GTPase Arf family profile. | 11 | 186 | 15.262403 | - |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 1 | 242 | 9.672821 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52210.1 | GTP-binding protein 1. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. | 3.47E-84 |
| RefSeq | XP_039816152.1 | uncharacterized protein LOC120678828 [Panicum virgatum] | 8.54E-124 |
| Q32LJ2 | ADP-ribosylation factor-related protein 1 OS=Bos taurus OX=9913 GN=ARFRP1 PE=2 SV=1 | 2.3E-37 | |
| TrEMBL | A0A8T0VEZ4 | Reverse transcriptase OS=Panicum virgatum OX=38727 GN=PVAP13_2NG272909 PE=4 SV=1 | 1.02E-138 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |