Basic Information
Locus ID:
AH07.2258
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 39618556 | 39625380 | - | AH07.2258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 109,297.32 Da | 56.44 | 72.33 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 402 | - | - |
| Coils | Coil | Coil | 432 | 452 | - | - |
| Coils | Coil | Coil | 957 | 977 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022680442.1 | uncharacterized protein LOC111256491 [Setaria italica] | 2.29E-10 |
| TrEMBL | A0A3L6RNH0 | Retrotransposon protein, putative, Ty3-gypsy subclass OS=Panicum miliaceum OX=4540 GN=C2845_PM11G18580 PE=4 SV=1 | 2.33E-13 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||