Basic Information
Locus ID:
AH07.2251
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 39552396 | 39553622 | + | AH07.2251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 42,419.00 Da | 43.30 | 65.86 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 50 | 85 | 3.7E-7 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 206 | 245 | 8.5E-7 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 151 | 196 | 1.4E-6 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 49 | 93 | 1.96E-9 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 119 | 390 | 1.96E-28 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 77 | 326 | 9.9E-25 | IPR015915 |
| SMART | SM00612 | kelc_smart | 161 | 209 | 1.8E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 211 | 258 | 2.6E-4 | IPR006652 |
| SMART | SM00256 | fbox_2 | 52 | 92 | 1.7E-6 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 8.85E-50 |
| RefSeq | XP_025794959.1 | F-box/kelch-repeat protein SKIP20-like [Panicum hallii] | 1.01E-236 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 8.61E-49 | |
| TrEMBL | A0A2S3GQ47 | F-box domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G272000 PE=4 SV=1 | 2.29E-235 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology