Basic Information
Locus ID:
AH07.2242
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin-protein ligase EL5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 39429232 | 39430257 | - | AH07.2242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 34,704.31 Da | 52.91 | 73.08 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 126 | 169 | 1.57805E-19 | - |
| Pfam | PF13639 | Ring finger domain | 126 | 169 | 2.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 184 | 5.16E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 173 | 4.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 168 | 9.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 169 | 12.518784 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 308 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 6.96E-20 |
| RefSeq | XP_039787617.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 6.3E-104 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 2.22E-50 | |
| TrEMBL | A0A3L6QDC7 | E3 ubiquitin-protein ligase EL5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM12G17490 PE=4 SV=1 | 1.43E-104 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology