Basic Information
Locus ID:
AH07.2143
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 38174800 | 38187874 | + | AH07.2143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 289,103.94 Da | 52.60 | 75.49 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11393 | bHLH_AtbHLH_like | 2374 | 2417 | 1.30042E-5 | - |
| Pfam | PF02992 | Transposase family tnp2 | 322 | 535 | 4.9E-89 | IPR004242 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 719 | 825 | 7.5E-38 | IPR025452 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 2363 | 2410 | 6.5E-7 | IPR011598 |
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 2184 | 2236 | 9.9E-5 | IPR003653 |
| Pfam | PF13963 | Transposase-associated domain | 5 | 78 | 2.8E-15 | IPR029480 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 960 | 1025 | 1.1E-12 | IPR025312 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2089 | 2250 | 2.16E-19 | IPR038765 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 2361 | 2421 | 1.07E-11 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 2354 | 2424 | 1.4E-10 | IPR036638 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 2077 | 2261 | 4.8E-10 | - |
| SMART | SM00353 | finulus | 2365 | 2415 | 2.0E-8 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 2359 | 2409 | 13.306331 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1866 | 1887 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2312 | 2335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1325 | 1354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1841 | 1958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1985 | 2017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1907 | 1954 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2317 | 2335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1317 | 1363 | - | - |
| Coils | Coil | Coil | 1641 | 1675 | - | - |
| Coils | Coil | Coil | 2406 | 2426 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49770.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. Encodes a member of the basic helix loop helix family of transcription factors. Loss of RGE1 function causes shriveled seeds that contain small embryos. The cuticle in the embryos does not develop normally, possible due to the adeherence of the endosperm to the developing embryo. RGE1 is expressed in the endosperm surrounding region which directly surrounds the developing embryo, however it exerts its effect non autonomously- in the developing embryo. Mutant seedlings are extremely sensitive to dessication due to the abnormal cuticle. | 2.73E-12 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q9FXA3 | Transcription factor bHLH95 OS=Arabidopsis thaliana OX=3702 GN=BHLH95 PE=2 SV=2 | 2.68E-11 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |