Basic Information
Locus ID:
AH07.2109
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 37590947 | 37592233 | - | AH07.2109 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 46,161.85 Da | 54.53 | 99.21 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 17 | 59 | 4.7018E-24 | - |
| Pfam | PF04564 | U-box domain | 13 | 87 | 1.1E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 200 | 401 | 4.99E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 92 | 1.7E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 420 | 1.1E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 91 | 6.8E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 16 | 82 | 2.9E-32 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 293 | 336 | 8.5574 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 12 | 89 | 37.684448 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 181 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 5.86E-112 |
| RefSeq | XP_025792292.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum hallii] | 9.73E-255 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 5.65E-111 | |
| TrEMBL | A0A1E5W351 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007158 PE=4 SV=1 | 2.49E-255 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology