Basic Information
Locus ID:
AH07.188
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 1868856 | 1877086 | + | AH07.188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 197,953.73 Da | 53.41 | 84.57 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1397 | 1824 | 1.28519E-121 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1444 | 1829 | 1.2E-82 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 121 | 592 | 5.76E-37 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1390 | 1822 | 1.7E-95 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1337 | 1591 | 4.9E-44 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 110 | 597 | 4.0E-52 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1702 | 1827 | 1.5E-31 | - |
| SMART | SM00185 | arm_5 | 153 | 201 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 243 | 283 | 150.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 286 | 324 | 17.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1411 | 1829 | 3.8E-83 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1437 | 1829 | 55.699818 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 990 | 1013 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 928 | 1017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 928 | 951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1072 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1207 | 1230 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_025807197.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL3 [Panicum hallii] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7F0L1 | HECT-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G001600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology