Basic Information
Locus ID:
AH07.1783
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 31241039 | 31244351 | + | AH07.1783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 61,738.65 Da | 53.34 | 82.63 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 193 | 256 | 3.5E-10 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 256 | 7.51E-14 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 319 | 462 | 5.58E-9 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 292 | 483 | 6.6E-8 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 259 | 2.7E-12 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 190 | 252 | 2.9E-5 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004954929.1 | U-box domain-containing protein 73 [Setaria italica] | 1.5E-300 |
| Q6K762 | U-box domain-containing protein 73 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB73 PE=2 SV=1 | 1.36E-127 | |
| TrEMBL | K3YYF1 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101759787 PE=4 SV=1 | 3.38E-299 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH07.1783, AH07.1785, BH07.1769, BH07.1771, CH07.1622 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0131120, gene-QOZ80_2BG0186460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0498340.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023227, gene-QYE76_044206 |
| Poaceae | Oryza coarctata | 1 | Oco04G010420 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g28870.1, LOC_Os02g29300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G136600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204338 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr0G027990 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G225800, Tel5E01G505800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG046970, gene_TRIDC5BG050810 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G317300.1, TraesCS5B02G317900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb241220_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20964 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13528 |