Basic Information
Locus ID:
AH07.168
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transcription regulatory region sequence-specific DNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 1715823 | 1717906 | - | AH07.168 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 20,609.99 Da | 57.38 | 76.52 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01486 | K-box region | 35 | 119 | 1.1E-27 | IPR002487 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 35 | 125 | 13.990682 | IPR002487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 181 | - | - |
| Coils | Coil | Coil | 69 | 118 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.1 | AGAMOUS-like 20. Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. | 4.84E-23 |
| RefSeq | XP_025806880.1 | MADS-box protein SOC1-like isoform X2 [Panicum hallii] | 1.54E-78 |
| O64645 | MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1 | 4.71E-22 | |
| TrEMBL | A0A4U6WFT4 | MADS-box transcription factor OS=Setaria viridis OX=4556 GN=SEVIR_1G003401v2 PE=4 SV=1 | 3.13E-72 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology