Basic Information
Locus ID:
AH07.1545
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Bulb-type mannose-specific lectin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 24150560 | 24159001 | - | AH07.1545 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 80,827.55 Da | 26.69 | 89.22 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 326 | 407 | 4.67405E-21 | - |
| CDD | cd00028 | B_lectin | 31 | 146 | 1.54972E-27 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 204 | 309 | 6.4E-20 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 70 | 172 | 7.6E-27 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 330 | 392 | 5.5E-15 | IPR003609 |
| Pfam | PF00069 | Protein kinase domain | 493 | 704 | 1.3E-40 | IPR000719 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 70 | 211 | 1.96E-21 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 472 | 692 | 1.03E-62 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 563 | 731 | 1.8E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 458 | 562 | 1.4E-21 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 18 | 143 | 5.3E-18 | IPR036426 |
| SMART | SM00473 | ntp_6 | 331 | 406 | 7.4E-7 | IPR003609 |
| SMART | SM00108 | blect_4 | 30 | 146 | 2.3E-27 | IPR001480 |
| PIRSF | PIRSF000641 | SRK | 1 | 730 | 2.5E-185 | IPR024171 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 489 | 731 | 34.237507 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 330 | 407 | 9.72155 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 24 | 141 | 16.673336 | IPR001480 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 1.07E-145 |
| RefSeq | XP_039789421.1 | receptor-like serine/threonine-protein kinase SD1-8 isoform X1 [Panicum virgatum] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 1.03E-144 | |
| TrEMBL | A0A811Q6Q9 | ribonuclease P OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS34902 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||