Basic Information
Locus ID:
AH07.1544
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 24126440 | 24131027 | - | AH07.1544 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 83,487.86 Da | 32.42 | 88.02 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 329 | 408 | 1.40999E-17 | - |
| CDD | cd00028 | B_lectin | 32 | 146 | 7.00098E-28 | IPR001480 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 505 | 746 | 1.8E-39 | IPR001245 |
| Pfam | PF01453 | D-mannose binding lectin | 71 | 173 | 2.6E-26 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 205 | 310 | 4.9E-21 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 331 | 393 | 8.9E-16 | IPR003609 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 71 | 212 | 6.94E-21 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 471 | 746 | 3.69E-61 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 555 | 751 | 7.3E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 445 | 554 | 3.7E-20 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 20 | 143 | 9.7E-18 | IPR036426 |
| SMART | SM00108 | blect_4 | 31 | 146 | 1.8E-26 | IPR001480 |
| SMART | SM00473 | ntp_6 | 332 | 407 | 9.0E-5 | IPR003609 |
| PIRSF | PIRSF000641 | SRK | 1 | 750 | 2.9E-193 | IPR024171 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 481 | 751 | 31.608583 | IPR000719 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 25 | 142 | 16.507099 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 331 | 408 | 9.903404 | IPR003609 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 5.27E-153 |
| RefSeq | XP_039789422.1 | receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Panicum virgatum] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 5.1E-152 | |
| TrEMBL | A0A2T7F5H7 | Receptor-like serine/threonine-protein kinase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G150300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 32 | AH01.3355, AH02.1435, AH02.995, AH03.348, AH03.629, AH06.571 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G100300, gene-BS78_08G101000 |