Basic Information
Locus ID:
AH07.1505
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 23202865 | 23211200 | - | AH07.1505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 70,037.24 Da | 49.89 | 82.99 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10557 | Cullin protein neddylation domain | 564 | 607 | 5.9E-12 | IPR019559 |
| Pfam | PF00888 | Cullin family | 384 | 488 | 3.1E-37 | IPR001373 |
| Pfam | PF00888 | Cullin family | 203 | 272 | 8.0E-9 | IPR001373 |
| Pfam | PF00888 | Cullin family | 290 | 383 | 6.3E-17 | IPR001373 |
| Pfam | PF00888 | Cullin family | 489 | 532 | 4.5E-11 | IPR001373 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 564 | 616 | 3.4E-12 | IPR036390 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 367 | 539 | 7.46E-46 | IPR036317 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 202 | 382 | 2.62E-43 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 213 | 285 | 1.7E-10 | - |
| Gene3D | G3DSA:6.10.280.240 | - | 286 | 330 | 9.1E-9 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 349 | 454 | 1.2E-30 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 552 | 616 | 2.6E-18 | IPR036388 |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 486 | 550 | 6.1E-11 | - |
| SMART | SM00182 | cul_2 | 374 | 501 | 1.3E-29 | IPR016158 |
| SMART | SM00884 | Cullin_Nedd8_2 | 540 | 610 | 2.6E-10 | IPR019559 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 489 | 529 | 10.369774 | IPR016158 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 379 | 488 | 22.521849 | IPR016158 |
| ProSitePatterns | PS01256 | Cullin family signature. | 589 | 616 | - | IPR016157 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46210.1 | cullin4. Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1. | 2.62E-165 |
| RefSeq | XP_039782277.1 | cullin-4-like [Panicum virgatum] | 2.71E-197 |
| Q8LGH4 | Cullin-4 OS=Arabidopsis thaliana OX=3702 GN=CUL4 PE=1 SV=1 | 2.53E-164 | |
| TrEMBL | A0A1D6L6V7 | Cullin-4 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d034361 PE=3 SV=1 | 4.37E-209 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH07.1505 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0386670 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0133620.1.CDS1 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G008640, Chr06G020320, Chr09G011090, Chr09G011260 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1B02G452600.1.cds1, TraesCS3A02G198500.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb170800_P001, Zm00001eb221320_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-24547, nbis-gene-35634, nbis-gene-56951 |