halophFGD

Basic Information

Locus ID: AH07.1449

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: GAG-pre-integrase domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH07	22104075	22111434	-	AH07.1449

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.65	137,707.69 Da	52.09	74.38	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00167	SANT	226	267	2.24034E-6	IPR001005
Pfam	PF00249	Myb-like DNA-binding domain	226	267	2.3E-5	IPR017930
Pfam	PF13976	GAG-pre-integrase domain	936	1003	3.3E-13	IPR025724
Pfam	PF14223	gag-polypeptide of LTR copia-type	572	702	1.3E-8	-
SUPERFAMILY	SSF46689	Homeodomain-like	225	269	2.57E-7	IPR009057
SUPERFAMILY	SSF53098	Ribonuclease H-like	1020	1171	2.15E-34	IPR012337
Gene3D	G3DSA:3.30.420.10	-	1013	1170	4.1E-31	IPR036397
Gene3D	G3DSA:1.10.10.60	-	220	276	3.5E-9	-
SMART	SM00717	sant	223	274	0.0092	IPR001005
ProSiteProfiles	PS50090	Myb-like domain profile.	226	272	6.841111	IPR001005
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	1066	1162	14.249363	IPR001584
MobiDBLite	mobidb-lite	consensus disorder prediction	730	757	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	42	173	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	321	342	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	372	386	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	363	388	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	739	754	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	321	346	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	63	87	-	-
Coils	Coil	Coil	392	447	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G53440.1	Homeodomain-like superfamily protein.	3.29E-17
RefSeq	XP_040384195.1	uncharacterized protein LOC121055551 [Oryza brachyantha]	1.37E-251
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	2.25E-61
TrEMBL	Q9AY40	Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0027P10.24 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asteraceae	Flaveria trinervia	4	Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240
Brassicaceae	Brassica nigra	3	BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N
Plantaginaceae	Plantago ovata	2	Pov_00029076, Pov_00039561
Poaceae	Echinochloa crus-galli	7	AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ... CH03.241, CH08.965
Poaceae	Eleusine coracana subsp. coracana	85	gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ... gene-QOZ80_1AG0024230, gene-QOZ80_1AG0037390, gene-QOZ80_1BG0049180, gene-QOZ80_1BG0085100, gene-QOZ80_2AG0105550, gene-QOZ80_2AG0133820, gene-QOZ80_2AG0148240, gene-QOZ80_2BG0158440, gene-QOZ80_2BG0169390, gene-QOZ80_2BG0181270, gene-QOZ80_2BG0183300, gene-QOZ80_2BG0199500, gene-QOZ80_2BG0201130, gene-QOZ80_2BG0205470, gene-QOZ80_2BG0206350, gene-QOZ80_3AG0208060, gene-QOZ80_3AG0220240, gene-QOZ80_3AG0224320, gene-QOZ80_3AG0225270, gene-QOZ80_3AG0227500, gene-QOZ80_3AG0235790, gene-QOZ80_3AG0243220, gene-QOZ80_3AG0244010, gene-QOZ80_3AG0245460, gene-QOZ80_3BG0256980, gene-QOZ80_3BG0283640, gene-QOZ80_4AG0323660, gene-QOZ80_4BG0329460, gene-QOZ80_4BG0330660, gene-QOZ80_4BG0330910, gene-QOZ80_4BG0332300, gene-QOZ80_4BG0350850, gene-QOZ80_5AG0362120, gene-QOZ80_5AG0362550, gene-QOZ80_5AG0365140, gene-QOZ80_5AG0388210, gene-QOZ80_5AG0395900, gene-QOZ80_5AG0398000, gene-QOZ80_5AG0407020, gene-QOZ80_5BG0416820, gene-QOZ80_5BG0421890, gene-QOZ80_5BG0426390, gene-QOZ80_5BG0429910, gene-QOZ80_5BG0452680, gene-QOZ80_5BG0453400, gene-QOZ80_5BG0455110, gene-QOZ80_5BG0456990, gene-QOZ80_6AG0507950, gene-QOZ80_6AG0522670, gene-QOZ80_6AG0526690, gene-QOZ80_6AG0534700, gene-QOZ80_6BG0459300, gene-QOZ80_6BG0460940, gene-QOZ80_6BG0494750, gene-QOZ80_6BG0496090, gene-QOZ80_6BG0502860, gene-QOZ80_7AG0560080, gene-QOZ80_7AG0575580, gene-QOZ80_7BG0584000, gene-QOZ80_7BG0585870, gene-QOZ80_7BG0595270, gene-QOZ80_7BG0595920, gene-QOZ80_7BG0598960, gene-QOZ80_8AG0618400, gene-QOZ80_8AG0619760, gene-QOZ80_8AG0620590, gene-QOZ80_8AG0639870, gene-QOZ80_8BG0656020, gene-QOZ80_8BG0665070, gene-QOZ80_9AG0670230, gene-QOZ80_9AG0673270, gene-QOZ80_9AG0674220, gene-QOZ80_9AG0675740, gene-QOZ80_9AG0681710, gene-QOZ80_9BG0694080, gene-QOZ80_9BG0701040, gene-QOZ80_9BG0709940, gene-QOZ80_9BG0711120, gene-QOZ80_9BG0711600, gene-QOZ80_UnG0724950, gene-QOZ80_UnG0726010, gene-QOZ80_UnG0726990, gene-QOZ80_UnG0730010
Poaceae	Lolium multiflorum	12	gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ... gene-QYE76_013193, gene-QYE76_029165, gene-QYE76_037880, gene-QYE76_051587, gene-QYE76_052644, gene-QYE76_053432, gene-QYE76_056804, gene-QYE76_058369, gene-QYE76_066013
Poaceae	Oryza coarctata	2	Oco06G010700, Oco21G004780
Poaceae	Sporobolus alterniflorus	17	Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ... Chr05G026820, Chr08G012260, Chr0G001440, Chr11G014150, Chr12G014230, Chr15G010750, Chr19G011560, Chr20G012820, Chr22G007660, Chr24G012860, Chr26G013550, Chr27G000450, Chr30G002280
Poaceae	Zoysia japonica	66	nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ... nbis-gene-1526, nbis-gene-16914, nbis-gene-17541, nbis-gene-19679, nbis-gene-24621, nbis-gene-27637, nbis-gene-27673, nbis-gene-27674, nbis-gene-33940, nbis-gene-33941, nbis-gene-34280, nbis-gene-34281, nbis-gene-34507, nbis-gene-39486, nbis-gene-39685, nbis-gene-40438, nbis-gene-40687, nbis-gene-41962, nbis-gene-43787, nbis-gene-44380, nbis-gene-44391, nbis-gene-44606, nbis-gene-46358, nbis-gene-46929, nbis-gene-48847, nbis-gene-49079, nbis-gene-50718, nbis-gene-50802, nbis-gene-50849, nbis-gene-51475, nbis-gene-51633, nbis-gene-52384, nbis-gene-52833, nbis-gene-52891, nbis-gene-52892, nbis-gene-53916, nbis-gene-53917, nbis-gene-54339, nbis-gene-54582, nbis-gene-54696, nbis-gene-55542, nbis-gene-55996, nbis-gene-56037, nbis-gene-56213, nbis-gene-56371, nbis-gene-56891, nbis-gene-56941, nbis-gene-56960, nbis-gene-57547, nbis-gene-57579, nbis-gene-57604, nbis-gene-57883, nbis-gene-58199, nbis-gene-58243, nbis-gene-58244, nbis-gene-58280, nbis-gene-58281, nbis-gene-58288, nbis-gene-58660, nbis-gene-59066, nbis-gene-59072, nbis-gene-6411, nbis-gene-643
Poaceae	Zoysia macrostachya	1	Zma_g3359