Basic Information
Locus ID:
AH07.1414
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin-conjugating enzyme E2 variant
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 21112071 | 21116064 | + | AH07.1414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 46,325.11 Da | 53.40 | 70.49 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 326 | 414 | 1.1E-12 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 295 | 428 | 3.62E-36 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 290 | 429 | 1.5E-40 | IPR016135 |
| SMART | SM00212 | ubc_7 | 299 | 427 | 1.0E-4 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 296 | 429 | 31.777676 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36060.1 | MMS ZWEI homologue 3. MMZ3/UEV1C encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1C can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ3/UEV1C transcripts are found at moderate levels in most plant organs, but cannot be detected in the pollen or 2 days after germination. Transcript levels do not appear to be stress-inducible. | 2.22E-94 |
| RefSeq | XP_004952271.1 | ubiquitin-conjugating enzyme E2 variant 1C [Setaria italica] | 5.93E-97 |
| Q9SJ44 | Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UEV1C PE=1 SV=1 | 2.14E-93 | |
| TrEMBL | A0A5J9VAB7 | UBC core domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_24172 PE=4 SV=1 | 1.33E-106 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||