Basic Information
Locus ID:
AH07.1409
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 20818467 | 20829755 | + | AH07.1409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 262,276.09 Da | 56.62 | 78.14 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 651 | 757 | 3.2E-35 | IPR025452 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 911 | 976 | 9.6E-13 | IPR025312 |
| Pfam | PF02992 | Transposase family tnp2 | 325 | 441 | 6.6E-50 | IPR004242 |
| Pfam | PF13963 | Transposase-associated domain | 5 | 78 | 4.7E-18 | IPR029480 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1906 | 2053 | 3.53E-15 | IPR038765 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 1876 | 2057 | 3.4E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1799 | 1828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1655 | 1767 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1504 | 1525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1720 | 1767 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1262 | 1297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1504 | 1527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 978 | 998 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1680 | 1701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1262 | 1285 | - | - |
| Coils | Coil | Coil | 1455 | 1489 | - | - |
| Coils | Coil | Coil | 1733 | 1753 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |