Basic Information
Locus ID:
AH07.1399
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 20360523 | 20364482 | + | AH07.1399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 50,692.03 Da | 52.91 | 65.33 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 277 | 341 | 1.35411E-18 | - |
| CDD | cd16872 | ARID_HMGB9-like | 74 | 151 | 2.92864E-38 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 68 | 151 | 8.7E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 277 | 344 | 8.6E-15 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 268 | 348 | 2.49E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 61 | 163 | 4.45E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 260 | 352 | 1.4E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 53 | 173 | 6.4E-28 | IPR036431 |
| SMART | SM00501 | bright_3 | 65 | 156 | 5.3E-27 | IPR001606 |
| SMART | SM01014 | ARID_2 | 61 | 151 | 3.7E-25 | - |
| SMART | SM00398 | hmgende2 | 276 | 345 | 6.4E-19 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 64 | 155 | 25.661951 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 277 | 344 | 14.633256 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 272 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 5.92E-84 |
| RefSeq | XP_025809830.1 | high mobility group B protein 15-like [Panicum hallii] | 1.33E-269 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 5.73E-83 | |
| TrEMBL | A0A2T7F5S0 | ARID domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G166500 PE=4 SV=1 | 1.28E-269 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology