Basic Information
Locus ID:
AH07.1167
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 13563337 | 13566396 | - | AH07.1167 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 52,695.52 Da | 44.72 | 80.14 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 182 | 459 | 9.77377E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 374 | 0.0067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 424 | 459 | 7.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 320 | 6.4E-7 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 167 | 461 | 9.42E-54 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 118 | 462 | 4.9E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 281 | 320 | 5.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 236 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 374 | 7.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 277 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 377 | 417 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 420 | 459 | 8.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 427 | 460 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 329 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 322 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 427 | 460 | 12.714052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 307 | 321 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 446 | 460 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 5.78E-221 |
| RefSeq | XP_021314547.1 | cell division cycle 20.2, cofactor of APC complex-like [Sorghum bicolor] | 6.2E-300 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 5.54E-220 | |
| TrEMBL | A0A194YRX0 | ANAPC4_WD40 domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3004G270800 PE=3 SV=1 | 1.4E-298 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology