Basic Information
Locus ID:
AH07.1072
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 11969840 | 11970484 | + | AH07.1072 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 22,799.15 Da | 48.02 | 83.41 | 0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 139 | 181 | 3.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 187 | 2.12E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 188 | 2.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 180 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 181 | 12.194218 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15975.1 | RING/U-box superfamily protein. | 5.42E-15 |
| RefSeq | XP_012699782.1 | RING-H2 finger protein ATL39 [Setaria italica] | 2.37E-106 |
| Q8LF65 | RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2 | 7.36E-14 | |
| TrEMBL | K3YY03 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101785972 PE=4 SV=1 | 5.36E-105 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology