halophFGD

Basic Information

Locus ID: AH07.1026

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH07	11233508	11233840	-	AH07.1026

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.07	11,977.58 Da	56.52	79.73	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF17123	RING-like zinc finger	38	64	1.6E-8	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	38	74	3.53E-10	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	36	79	1.6E-10	IPR013083

KEGG Pathway

KO Term:

K19038 (E3 ubiquitin-protein ligase ATL41 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G40070.1	RING/U-box superfamily protein.	3.76E-11
RefSeq	XP_025819207.1	E3 ubiquitin-protein ligase EL5-like [Panicum hallii]	3.87E-25
Swiss-Prot	Q8W571	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	3.73E-10
TrEMBL	A0A2S3GNB7	RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G106000 PE=4 SV=1	8.74E-24

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	AH07.1026, BH07.1145