Basic Information
Locus ID:
AH06.980
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
flocculation via cell wall protein-carbohydrate interaction
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 10404589 | 10411586 | + | AH06.980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 113,385.73 Da | 52.99 | 66.63 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 843 | 975 | 5.89E-10 | IPR038765 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 833 | 986 | 8.7E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 746 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 537 | - | - |
| Coils | Coil | Coil | 445 | 479 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052134005.1 | uncharacterized protein LOC127752639 [Oryza glaberrima] | 1.44E-89 |
| TrEMBL | Q5WMT7 | Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1116_F05.7 PE=3 SV=1 | 1.71E-155 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |