Basic Information
Locus ID:
AH06.752
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 7625021 | 7625986 | - | AH06.752 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 34,664.61 Da | 80.91 | 62.65 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 188 | 230 | 1.75501E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 1.1E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 188 | 230 | 6.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 236 | 6.83E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 236 | 3.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 229 | 7.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 230 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 259 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 3.3E-44 |
| RefSeq | XP_025810728.1 | E3 ubiquitin-protein ligase RING1-like [Panicum hallii] | 4.99E-163 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 7.02E-35 | |
| TrEMBL | A0A2S3HKU5 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_4G284000 PE=4 SV=1 | 1.13E-161 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology