Basic Information
Locus ID:
AH06.701
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 6799347 | 6802480 | + | AH06.701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 80,230.39 Da | 49.91 | 73.04 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| Coils | Coil | Coil | 506 | 540 | - | - |
| Coils | Coil | Coil | 618 | 638 | - | - |
| Coils | Coil | Coil | 555 | 575 | - | - |
| Coils | Coil | Coil | 590 | 610 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034575517.1 | uncharacterized protein LOC117839325 [Setaria viridis] | 2.68E-22 |
| TrEMBL | A0A3L6RZY1 | Retrotransposon protein, putative, Ty3-gypsy subclass OS=Panicum miliaceum OX=4540 GN=C2845_PM09G11190 PE=4 SV=1 | 4.23E-26 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||