Basic Information
Locus ID:
AH06.70
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 618721 | 621962 | - | AH06.70 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 27,983.35 Da | 21.25 | 71.49 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 17 | 85 | 6.57247E-31 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 77 | 1.7E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 12 | 110 | 2.44E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 12 | 84 | 3.7E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 16 | 85 | 2.8E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 15 | 89 | 10.002025 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 269 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 1.11E-85 |
| RefSeq | XP_025811194.1 | binding partner of ACD11 1-like [Panicum hallii] | 6.22E-160 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 7.2E-70 | |
| TrEMBL | A0A3L6PAX6 | RRM domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM10G00880 PE=4 SV=1 | 3.46E-159 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology