Basic Information
Locus ID:
AH06.611
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the AAA ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 5585700 | 5592823 | + | AH06.611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.45 | 132,531.34 Da | 62.57 | 74.21 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 1003 | 1046 | 3.92444E-20 | - |
| CDD | cd00009 | AAA | 157 | 329 | 1.72817E-28 | - |
| Pfam | PF17862 | AAA+ lid domain | 351 | 394 | 1.1E-10 | IPR041569 |
| Pfam | PF13639 | Ring finger domain | 1003 | 1046 | 5.6E-12 | IPR001841 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 191 | 328 | 2.1E-37 | IPR003959 |
| SUPERFAMILY | SSF57850 | RING/U-box | 998 | 1052 | 5.18E-20 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 149 | 400 | 2.06E-65 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 979 | 1052 | 1.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 144 | 328 | 7.2E-67 | IPR027417 |
| Gene3D | G3DSA:2.40.50.140 | - | 24 | 143 | 1.3E-28 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 330 | 399 | 3.5E-24 | - |
| SMART | SM00184 | ring_2 | 1004 | 1045 | 9.7E-7 | IPR001841 |
| SMART | SM00382 | AAA_5 | 187 | 331 | 5.9E-20 | IPR003593 |
| TIGRFAM | TIGR01242 | 26Sp45: 26S proteasome subunit P45 family | 79 | 399 | 3.6E-122 | IPR005937 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1004 | 1046 | 12.194218 | IPR001841 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 299 | 317 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1171 | 1215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 793 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 835 | 873 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53750.1 | regulatory particle triple-A 1A. 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA, | 1.04E-260 |
| RefSeq | XP_025812142.1 | 26S proteasome regulatory subunit 7A-like [Panicum hallii] | 5.51E-268 |
| P0DKJ9 | 26S proteasome regulatory subunit 7A OS=Oryza sativa subsp. japonica OX=39947 GN=RPT1A PE=2 SV=1 | 5.15E-268 | |
| TrEMBL | A0A3L6PI28 | 26S protease regulatory subunit 7-like OS=Panicum miliaceum OX=4540 GN=C2845_PM10G05140 PE=3 SV=1 | 1.25E-266 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology