Basic Information
Locus ID:
AH06.481
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 4466150 | 4480704 | + | AH06.481 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 211,708.67 Da | 48.52 | 76.97 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00427 | Ribosomal_L29_HIP | 1769 | 1830 | 2.57908E-12 | - |
| CDD | cd01650 | RT_nLTR_like | 1309 | 1558 | 4.02677E-52 | - |
| CDD | cd09076 | L1-EN | 796 | 1034 | 3.76662E-39 | - |
| Pfam | PF06984 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) | 1743 | 1830 | 2.1E-31 | IPR010729 |
| Pfam | PF08159 | NUC153 domain | 501 | 527 | 6.4E-11 | IPR012580 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1319 | 1556 | 1.5E-41 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1242 | 1620 | 4.23E-22 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 793 | 1021 | 4.71E-23 | IPR036691 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 343 | 1.07E-28 | IPR036322 |
| SUPERFAMILY | SSF46561 | Ribosomal protein L29 (L29p) | 1766 | 1833 | 2.88E-9 | IPR036049 |
| Gene3D | G3DSA:2.130.10.10 | - | 28 | 346 | 3.6E-21 | IPR015943 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 793 | 1035 | 2.0E-33 | IPR036691 |
| Gene3D | G3DSA:6.10.330.20 | - | 1737 | 1839 | 1.0E-30 | IPR038340 |
| Gene3D | G3DSA:3.30.70.270 | - | 1354 | 1531 | 8.0E-8 | IPR043128 |
| SMART | SM00320 | WD40_4 | 222 | 262 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 308 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 4.1 | IPR001680 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1296 | 1558 | 23.040426 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 565 | - | - |
| Coils | Coil | Coil | 485 | 505 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56990.1 | embryo sac development arrest 7. | 2.16E-239 |
| RefSeq | XP_025811720.1 | nucleolar protein 10 [Panicum hallii] | 0 |
| Q9BSC4 | Nucleolar protein 10 OS=Homo sapiens OX=9606 GN=NOL10 PE=1 SV=1 | 4.16E-124 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15844 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4590 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027277 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58853, Sbi_jg63755 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23134 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009235 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl02252, Sgl07403, Sgl82719 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000001886, gene:ENSEOMG00000002747 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6BG0025040, CQ.Regalona.r1.9AG0011260 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30166350, pistato.v30275280 |
| Apiaceae | Apium graveolens | 1 | Ag3G02797 |
| Arecaceae | Cocos nucifera | 1 | scaffold019715G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715066 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.395.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G16881, Ftri8G23504 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G56990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005807m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05590.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g003530.2N, BniB06g056110.2N, BniB08g071720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1036 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g10090 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0533s00004.v1.0, Dusal.0533s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01800 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8746 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2609 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000007 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16083 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.481, BH06.164, CH06.152 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0643180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027555 |
| Poaceae | Oryza coarctata | 2 | Oco10G003550, Oco12G001200 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03780.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_10G021000, gene-BS78_K328500, gene-BS78_K328600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303692, Pt_Chr0401917, Pt_Chr0503301, Pt_Chr0506188 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G008340, Chr08G007450, Chr21G000080, Chr24G003830 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G093300, Tel7E01G129100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG063620, gene_TRIDC4BG019790 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G429300.1, TraesCS7A02G060100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb034510_P001, Zm00001eb373800_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51172 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31269 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1307, evm.TU.LG21.1018 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1634 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17552 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13562 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.88 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011607 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13221 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12327 |
| Salicaceae | Populus euphratica | 2 | populus_peu10821, populus_peu26261 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606965, gene-LOC132608238 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031938 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21177_chr08_-, gene_10441 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1954 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19690.v3.1 |