Basic Information
Locus ID:
AH06.470
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 4394210 | 4396909 | + | AH06.470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 27,892.71 Da | 49.78 | 49.00 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 158 | 240 | 5.3247E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 230 | 2.3E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 138 | 257 | 4.03E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 154 | 245 | 3.2E-17 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 159 | 240 | 0.0016 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 244 | 11.31529 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 3.04E-49 |
| RefSeq | XP_025813539.1 | nuclear speckle RNA-binding protein A-like [Panicum hallii] | 8.62E-176 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 3.71E-51 | |
| TrEMBL | A0A3L6PF58 | Nuclear speckle RNA-binding protein A OS=Panicum miliaceum OX=4540 GN=C2845_PM10G00130 PE=4 SV=1 | 9.66E-175 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology