Basic Information
Locus ID:
AH06.38
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 434889 | 445061 | - | AH06.38 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 276,062.78 Da | 48.63 | 78.47 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13963 | Transposase-associated domain | 3 | 76 | 8.9E-18 | IPR029480 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 712 | 818 | 7.1E-38 | IPR025452 |
| Pfam | PF02992 | Transposase family tnp2 | 315 | 528 | 3.8E-91 | IPR004242 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1934 | 2028 | 3.34E-7 | IPR038765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1821 | 1856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1171 | 1195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1742 | 1790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1522 | 1545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1694 | 1723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1007 | 1027 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1675 | 1794 | - | - |
| Coils | Coil | Coil | 1480 | 1507 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47470.1 | Nodulin MtN21 /EamA-like transporter family protein. | 1.54E-72 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q9FGL0 | WAT1-related protein At5g47470 OS=Arabidopsis thaliana OX=3702 GN=At5g47470 PE=3 SV=1 | 1.48E-71 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |