Basic Information
Locus ID:
AH06.3080
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 47172670 | 47178762 | + | AH06.3080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 95,109.51 Da | 59.94 | 75.19 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 444 | 492 | 3.6E-17 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 264 | 319 | 1.3E-17 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 511 | 552 | 7.5E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 599 | 654 | 6.38E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 495 | 553 | 2.88E-15 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 747 | 844 | 4.46E-8 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 598 | 657 | 3.5E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 693 | 860 | 5.0E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 497 | 579 | 3.2E-17 | IPR013083 |
| SMART | SM00249 | PHD_3 | 510 | 551 | 2.0E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 598 | 655 | 6.9E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 508 | 553 | 10.469 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 511 | 550 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 83 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 7.99E-202 |
| RefSeq | XP_025813710.1 | uncharacterized protein LOC112891032 [Panicum hallii] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 4.64E-13 | |
| TrEMBL | A0A2T7DTK7 | PHD-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G000500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology