Basic Information
Locus ID:
AH06.2896
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 45928149 | 45930755 | + | AH06.2896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 67,715.99 Da | 66.47 | 60.69 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12776 | Myb/SANT-like DNA-binding domain | 315 | 407 | 4.5E-9 | IPR024752 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 504 | - | - |
| Coils | Coil | Coil | 527 | 554 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022681803.1 | L10-interacting MYB domain-containing protein-like [Setaria italica] | 3.48E-60 |
| TrEMBL | A0A2T7EFI2 | Myb_DNA-bind_3 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G330000 PE=4 SV=1 | 2.23E-85 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB03g058380.2N |
| Poaceae | Echinochloa crus-galli | 24 | AH01.4755, AH02.2722, AH04.1015, AH05.1286, AH05.1766 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0063290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0136190.1 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g46770.1 |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_01G057300, gene-BS78_02G211300, gene-BS78_K021000 ... |
| Poaceae | Sporobolus alterniflorus | 18 | Chr01G028140, Chr02G020120, Chr02G020680, Chr03G014060 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G440600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG030720, gene_TRIDC2AG037920 ... |
| Poaceae | Zea mays | 4 | Zm00001eb009750_P001, Zm00001eb012990_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21483 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10439 |