Basic Information
Locus ID:
AH06.2865
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH06 | 45631377 | 45633175 | - | AH06.2865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 47,074.35 Da | 48.17 | 91.30 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 254 | 384 | 8.93496E-61 | - |
| CDD | cd17939 | DEADc_EIF4A | 45 | 243 | 4.02272E-135 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 267 | 375 | 8.9E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 66 | 227 | 2.6E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 110 | 395 | 4.98E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 250 | 414 | 3.7E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 30 | 249 | 3.5E-67 | IPR027417 |
| SMART | SM00487 | ultradead3 | 60 | 257 | 8.1E-58 | IPR014001 |
| SMART | SM00490 | helicmild6 | 294 | 375 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 253 | 414 | 25.880337 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 41 | 69 | 10.513013 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 72 | 242 | 29.42787 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 188 | 196 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 2.05E-275 |
| RefSeq | XP_025811222.1 | eukaryotic initiation factor 4A-3 [Panicum hallii] | 5.26E-298 |
| Q6Z2Z4 | Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1 | 1.62E-294 | |
| TrEMBL | A0A3L6PFP0 | Eukaryotic initiation factor 4A-3 OS=Panicum miliaceum OX=4540 GN=C2845_PM10G20450 PE=3 SV=1 | 2.92E-297 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology